Difference between revisions of "1.3.6.1.4.1.19376.1.3.1.5"

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Laboratory Isolate Organizer 1.3.6.1.4.1.19376.1.3.1.5

Laboratory Isolate Organizer, when present, SHALL be recorded as an <organizer> in an <entryRelationship> under the Laboratory Data Processing Entry as demonstrated in the figure below. The figure below shows how the information for this element is coded, and further constraints are provided in the following sections.

Uses

See Templates using Laboratory Isolate Organizer

Specification

Laboratory Isolate Organizer Example

<section classCode="DOCSECT">
  ...
  <entry typeCode="DRIV">
    <templateId extension="Lab.Report.Data.Processing.Entry" root="1.3.6.1.4.1.19376.1.3.1"/>
    <act classCode="ACT" moodCode="EVN">
      ...
      <entryRelationship typeCode="COMP">
        <organizer classCode="CLUSTER" moodCode="EVN">
          <templateId extension="??" root="1.3.6.1.4.1.19376.1.3.1.5"/>
          <statusCode code="completed"/>
          <effectiveTime value="20071108000000.0000-0500"/>
          <specimen typeCode="SPC">
            <specimenRole classCode="ISLT">
              <id extension="55584739" root="1.19.6.11.13"/>
              <specimenPlayingEntity classCode="MIC">
                <code code="79153007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED-CT" 
                      displayName="Salmonella tennessee 6,7,14;z29;1,2,7"/>
              </specimenPlayingEntity>
            </specimenRole>
          </specimen>
          <component>
            <observation classCode="OBS" moodCode="EVN">
              <templateId extension="??" root="1.3.6.1.4.1.19376.1.3.1.6"/>
              <code code="89029-0" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" 
                    displayName="Microbiology Culture"/>
              ...
            </observation>
          </component>
          <component>
            <organizer classCode="BATTERY" moodCode="EVN">
              <templateId extension="??" root="1.3.6.1.4.1.19376.1.3.1.4"/>
              <code code="29576-6" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" 
                    displayName="Microbiology Susceptibility">
              ...
            </organizer>
          </component>
          ...
        </organizer>
      </entryRelationship>
    </act>
  </entry>
</section>

<organizer classCode="CLUSTER" moodCode="EVN">

The Laboratory Isolate Organizer encapsulates an Isolate, and contains the batteries and observations performed on that Isolate, as well as the microorganism identification. It is represented by an organizer element, with classCode="CLUSTER" moodCode="EVN".

<templateId root='1.3.6.1.4.1.19376.1.3.1.5'/>

The <templateId> element identifies this <organizer> as a Laboratory Isolate Organizer. The templateId shall be recorded as shown above, root="1.3.6.1.4.1.19376.1.3.1.5".

<statusCode code=" "/>

The <statusCode> element SHALL be either "completed" or "obsolete". A status of completed is expected. A status of obsolete means the Isolate identification has been replaced by a newer identification (following it) in this revision of the report.

<effectiveTime value=" "/>

The Isolate's relevant clinical time (ideally specimen collection time) MAY be present.

<specimen typeCode="SPC">

The <specimen> SHALL have typeCode="SPC".

<specimenRole classCode="ISLT">

The <specimenRole> SHALL have classCode="ISLT".

<id extension=" " root=" "/>

The Isolate unique identifier within the laboratory.

<specimenPlayingEntity classCode="MIC">

The <specimenPlayingEntity> SHALL have classCode="MIC".

The <code> element SHALL identify the Isolate with a unique international vocabulary. The code, codeSystem, and displayName SHALL be present. You MAY also populate codeSystemName.

<component><observation classCode="OBS" moodCode="EVN">...</observation></component>

The Laboratory Observations performed on the Isolate.

<component><organizer classCode="BATTERY" moodCode="EVN">...</organizer></component>

The Laboratory Batteries performed on the Isolate.