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Return to: [[1.3.6.1.4.1.19376.1.3.1|Laboratory Data Processing Entry]]
Return to: [[1.3.6.1.4.1.19376.1.3.1|Laboratory Data Processing Entry]]


{{HL7V3|Laboratory Isolate Organizer |1.3.6.1.4.1.19376.1.3.1.5|Trial|
{{HL7V3|Laboratory Isolate Organizer|1.3.6.1.4.1.19376.1.3.1.5|Trial|


Laboratory Organizer, when present, shall be recorded as an organizer in an entryRelationship under the Laboratory data processing entry ([[1.3.6.1.4.1.19376.1.3.1]]) as demonstrated in the figure below. This module is out of the XDS-Lab Specification. This module does not change requirements stated in that specification but is structured as a module to ensure consistent content representation and re-usability.
Laboratory Isolate Organizer, when present, SHALL be recorded as an organizer in an entryRelationship under the [[1.3.6.1.4.1.19376.1.3.1| Laboratory data processing entry]] as demonstrated in the figure below.


The figure below shows how the information for this element is coded, and further constraints are provided in the following sections.
The figure below shows how the information for this element is coded, and further constraints are provided in the following sections.
|Example=
|Example=
<pre>
<pre>
<ClinicalDocument
<section classCode="DOCSECT">
   ...
   ...
   <component typeCode="COMP">
   <entry typeCode="DRIV">
     <structuredBody classCode="DOCBODY" moodCode="EVN">
    <templateId extension="Lab.Report.Data.Processing.Entry" root="1.3.6.1.4.1.19376.1.3.1"/>
       <component typeCode="COMP">
     <act classCode="ACT" moodCode="EVN">
         <section classCode="DOCSECT">
      ...
       <entryRelationship typeCode="COMP">
         <organizer classCode="CLUSTER" moodCode="EVN">
          <templateId extension="??" root="1.3.6.1.4.1.19376.1.3.1.5"/>
          <statusCode code="completed"/>
          <effectiveTime value="20071108000000.0000-0500"/>
          <specimen>
            <specimenRole classCode="ISLT">
              <specimenPlayingEntity>
                <code code="79153007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED-CT"
                      displayName="Salmonella tennessee 6,7,14;z29;1,2,7"/>
              </specimenPlayingEntity>
            </specimenRole>
          </specimen>
          <component>
            <observation classCode="OBS" moodCode="EVN">
              ...
            </observation>
          </component>
           ...
           ...
          <entry typeCode="DRIV">
        </organizer>
            <templateId extension="Lab.Report.Data.Processing.Entry" root="1.3.6.1.4.1.19376.1.3.1"/>
      </entryRelationship>
            <act classCode="ACT" moodCode="EVN">
    </act>
              ...
  </entry>
              <entryRelationship typeCode="COMP">
</section>
                <organizer classCode="CLUSTER" moodCode="EVN">
                  <templateId root="1.3.6.1.4.1.19376.1.3.1.5"/>
                  <statusCode code="completed"/>
                  <effectiveTime value="20071108000000.0000-0500"/>
                  <specimen>
                    <specimenRole classCode="ISLT">
                      <specimenPlayingEntity>
                        <code code="79153007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED-CT"
                          displayName="Salmonella tennessee 6,7,14;z29;1,2,7">
                          <translation xsi:type="CE" code="L-17601" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED"
                            displayName="Salmonella tennessee 6,7,14;z29;1,2,7"/>
</pre>
</pre>
|Standards={{Std|CRS}}
<!--{{Std|CCD}}-->
}}
}}
=====<organizer classCode="CLUSTER" moodCode="EVN">=====
The Laboratory Isolate Organizer encapsulates an <b>Isolate</b>, and contains the batteries and observations performed on that <b>Isolate</b>, as well as the microorganism identification. It is represented by an organizer element, with classCode="CLUSTER" moodCode="EVN".


=====<templateId root='1.3.6.1.4.1.19376.1.3.1.5'/>=====
=====<templateId root='1.3.6.1.4.1.19376.1.3.1.5'/>=====
The <templateId> element identifies this <organizer> as the Laboratory Isolate Organizer.  The templateId shall be recorded as shown above, root='1.3.6.1.4.1.19376.1.3.1.5'.
The <templateId> element identifies this <organizer> as a Laboratory Isolate Organizer.  The templateId shall be recorded as shown above, root="1.3.6.1.4.1.19376.1.3.1.5".


=====<statusCode code=" "/>=====
=====<statusCode code=" "/>=====
The status shall be either "completed" or "obsolete". A status of completed is expected. A status of obsolete means the isolation identification has been replaced by a newer identification (following it) in this revision of the report.
The <statusCode> element SHALL be either "completed" or "obsolete". A status of completed is expected. A status of obsolete means the <b>Isolate</b> identification has been replaced by a newer identification (following it) in this revision of the report.


NOTE: Lab TF does not address the use of statusCode - needs discussion.
NOTE: Lab TF does not address the use of statusCode - needs discussion.


=====<effectiveTime value=" "/>=====
=====<effectiveTime value=" "/>=====
The isolation's relevant clinical time (ideally specimen collection time) MAY be present.
The <b>Isolate's</b> relevant clinical time (ideally specimen collection time) MAY be present.
 
=====<specimen><specimenRole classCode="ISLT">=====
The <specimenRole> SHALL have a classCode "ISLT".
 
=====<specimenPlayingEntity><code code=" " codeSystem=" " codeSystemName=" " displayName=" "/></specimenPlayingEntity>=====
The <code> element SHALL identify the <b>Isolate</b> with a unique international vocabulary. The code, codeSystem, and displayName SHALL be present. You MAY also populate codeSystemName.
 
=====<component><observation classCode="OBS" moodCode="EVN">...</observation></component>=====
The Laboratory Observations performed on the <b>Isolate</b>.


=====<specimen><specimenRole classCode="ISLT"><specimenPlayingEntity>...</specimen>=====
=====<component><organizer classCode="BATTERY" moodCode="EVN">...</organizer></component>=====
The specimenRole shall be "ISLT" and the organism shall be coded with at least one unique international vocabulary.
The Laboratory Batteries performed on the <b>Isolate</b>.

Revision as of 14:04, 13 June 2008

Return to: PCC TF-1/PHLAB/XDSLAB Harmonization
Return to: Laboratory Data Processing Entry

Development Only

The PCC Wiki Content is used only for development of IHE PCC Content. The Normative content of the PCC Technical Framework and the current supplements can be found at http://www.ihe.net/Technical_Framework/index.cfm#PCC

Laboratory Isolate Organizer 1.3.6.1.4.1.19376.1.3.1.5

Laboratory Isolate Organizer, when present, SHALL be recorded as an organizer in an entryRelationship under the Laboratory data processing entry as demonstrated in the figure below.

The figure below shows how the information for this element is coded, and further constraints are provided in the following sections.


Uses

See Templates using Laboratory Isolate Organizer

Specification
Laboratory Isolate Organizer Example 
<section classCode="DOCSECT">
  ...
  <entry typeCode="DRIV">
    <templateId extension="Lab.Report.Data.Processing.Entry" root="1.3.6.1.4.1.19376.1.3.1"/>
    <act classCode="ACT" moodCode="EVN">
      ...
      <entryRelationship typeCode="COMP">
        <organizer classCode="CLUSTER" moodCode="EVN">
          <templateId extension="??" root="1.3.6.1.4.1.19376.1.3.1.5"/>
          <statusCode code="completed"/>
          <effectiveTime value="20071108000000.0000-0500"/>
          <specimen>
            <specimenRole classCode="ISLT">
              <specimenPlayingEntity>
                <code code="79153007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED-CT" 
                      displayName="Salmonella tennessee 6,7,14;z29;1,2,7"/>
              </specimenPlayingEntity>
            </specimenRole>
          </specimen>
          <component>
            <observation classCode="OBS" moodCode="EVN">
              ...
            </observation>
          </component>
          ...
        </organizer>
      </entryRelationship>
    </act>
  </entry>
</section>



<organizer classCode="CLUSTER" moodCode="EVN">

The Laboratory Isolate Organizer encapsulates an Isolate, and contains the batteries and observations performed on that Isolate, as well as the microorganism identification. It is represented by an organizer element, with classCode="CLUSTER" moodCode="EVN".

<templateId root='1.3.6.1.4.1.19376.1.3.1.5'/>

The <templateId> element identifies this <organizer> as a Laboratory Isolate Organizer. The templateId shall be recorded as shown above, root="1.3.6.1.4.1.19376.1.3.1.5".

<statusCode code=" "/>

The <statusCode> element SHALL be either "completed" or "obsolete". A status of completed is expected. A status of obsolete means the Isolate identification has been replaced by a newer identification (following it) in this revision of the report.

NOTE: Lab TF does not address the use of statusCode - needs discussion.

<effectiveTime value=" "/>

The Isolate's relevant clinical time (ideally specimen collection time) MAY be present.

<specimen><specimenRole classCode="ISLT">

The <specimenRole> SHALL have a classCode "ISLT".

<specimenPlayingEntity></specimenPlayingEntity>

The element SHALL identify the Isolate with a unique international vocabulary. The code, codeSystem, and displayName SHALL be present. You MAY also populate codeSystemName.

<component><observation classCode="OBS" moodCode="EVN">...</observation></component>

The Laboratory Observations performed on the Isolate.

<component><organizer classCode="BATTERY" moodCode="EVN">...</organizer></component>

The Laboratory Batteries performed on the Isolate.

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