1.3.6.1.4.1.19376.1.3.1.5

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Laboratory Isolate Organizer 1.3.6.1.4.1.19376.1.3.1.5

A Laboratory Isolate Organizer is used to group Laboratory Observations for a particular isolate. Laboratory Isolate Organizer, when present, SHALL be recorded as an <organizer> in an <entryRelationship> under the Laboratory Data Processing Entry as demonstrated in the figure below. The figure below shows how the information for this element is coded, and further constraints are provided in the following sections.

Uses

See Templates using Laboratory Isolate Organizer

Specification

Laboratory Isolate Organizer Example

<section classCode="DOCSECT"> <templateId root="1.3.6.1.4.1.19376.1.3.3.2.1"/> ... <entry typeCode="DRIV"> <templateId root="1.3.6.1.4.1.19376.1.3.1"/> <act classCode="ACT" moodCode="EVN"> ... <entryRelationship typeCode="COMP"> <organizer classCode="CLUSTER" moodCode="EVN"> <templateId root="1.3.6.1.4.1.19376.1.3.1.5"/> <statusCode code="completed"/> <effectiveTime value="20071108000000.0000-0500"/> <specimen typeCode="SPC"> <specimenRole classCode="ISLT"> <id extension="55584739" root="1.19.6.11.13"/> <specimenPlayingEntity classCode="MIC"> <code code="79153007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED-CT" displayName="Salmonella tennessee 6,7,14;z29;1,2,7"/> </specimenPlayingEntity> </specimenRole> </specimen> <performer typeCode="PRF"> <templateId root="1.3.6.1.4.1.19376.1.3.3.1.7"/> ... </performer> <author typeCode="AUT"> ... </author> <participant typeCode="AUTHEN"> <templateId root="1.3.6.1.4.1.19376.1.3.3.1.5"/> ... </participant> <participant typeCode="RESP"> ... </participant> <participant typeCode="DEV"> ... </participant> <component> <observation classCode="OBS" moodCode="EVN"> <templateId root="1.3.6.1.4.1.19376.1.3.1.6"/> <code code="89029-0" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Microbiology Culture"/> ... </observation> </component> <component> <organizer classCode="BATTERY" moodCode="EVN"> <templateId root="1.3.6.1.4.1.19376.1.3.1.4"/> <code code="29576-6" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Microbiology Susceptibility"> ... </organizer> </component> ... </organizer> </entryRelationship> </act> </entry> </section>

<organizer classCode="CLUSTER" moodCode="EVN">

The Laboratory Isolate Organizer encapsulates an Isolate, and contains the batteries and observations performed on that Isolate, as well as the microorganism identification. It SHALL be represented by an <organizer> element, with classCode="CLUSTER" moodCode="EVN".

<templateId root="1.3.6.1.4.1.19376.1.3.1.5"/>

The <templateId> element identifies this <organizer> as a Laboratory Isolate Organizer. The templateId SHALL be recorded as shown above, root="1.3.6.1.4.1.19376.1.3.1.5".

<statusCode code=" "/>

The <statusCode> element SHALL be either "completed" or "obsolete". A status of completed is expected. A status of obsolete means the Isolate identification has been replaced by a newer identification (following it) in this revision of the report.

<effectiveTime value=" "/>

The Isolate's relevant clinical time (ideally specimen collection time) MAY be present.

<specimen typeCode="SPC">

The <specimen> SHALL have typeCode="SPC".

<specimenRole classCode="ISLT">

The <specimenRole> SHALL have classCode="ISLT".

<performer typeCode="PRF"/>

A Laboratory Observation MAY contain the person who performed the test when it is different from the one documented at a higher level, including the header.

<author typeCode="AUT"/>

A Laboratory Observation shall contain author(s) of the Laboratory Observation when multiple header author(s) exist and not all apply to this Laboratory Observation. The author/time element carries the date&time the laboratory report was produced by the system.

<participant typeCode=" "/>

A Laboratory Observation MAY contain up to 3 types of participants "AUTHEN", "RESP", and "DEV".

AUTHEN: The verifier of the observations of this part of the report. In the case where a laboratory report has multiple verifiers. Each verifier is attached to the subset of observations he or she verified, by the means of a <participant> element.

RESP: The person responsible for the provision of the observations of this part of the report. In the case where a subset of the observations is subcontracted to an external laboratory, this external laboratory (with its address and telcom) and the actual performer is represented by a <performer> element, whereas the Director of this subcontractor laboratory is carried by the <participant> element being attached to the same level as the <performer> element.

DEV: A device or equipment, which was used to produce this set of results (e.g. an analyzer).

<id extension=" " root=" "/>

The Isolate MAY have a unique identifier from within the laboratory.

<specimenPlayingEntity classCode="MIC">

The <specimenPlayingEntity> SHALL have classCode="MIC".

The <code> element SHALL identify the Isolate with a unique international vocabulary. The code, codeSystem, and displayName SHALL be present. You MAY also populate codeSystemName.

<component><observation classCode="OBS" moodCode="EVN">...</observation></component>

The Laboratory Observations performed on the Isolate. A Laboratory Isolate Organizer shall have at least one Laboratory Observation. A Laboratory Observation may occur under a Laboratory Battery Organizer.

<component><organizer classCode="BATTERY" moodCode="EVN">...</organizer></component>

The Laboratory Battery Organizer performed on the Isolate. A Laboratory Isolate Organizer may have a Laboratory Battery Organizer.